As I stood in my kitchen, the scent of roasted garlic enveloped me like a warm embrace, transporting me to cozy family dinners. Today, I’m excited to share my creamy Spaghetti Squash Au Gratin—a delightful comfort food twist that will please both health-conscious eaters and those craving a rich, cheesy indulgence. This dish combines the naturally sweet root veggie with a luscious cheese sauce, making it a satisfying choice that’s gluten-free and packed with vitamins and fiber. Plus, it’s quick to prepare and perfect for weeknight meals or special occasions alike! Are you ready to elevate your dinner game with a dish that’s both comforting and nourishing?

Why is Spaghetti Squash Au Gratin a must-try?

Comforting Flavor: This creamy dish captures the essence of traditional au gratin while being gluten-free and nutritious. Easy Preparation: With straightforward steps, you can whip this up in no time—perfect for busy weeknights! Versatile Options: Customize it by adding proteins like chicken or bacon, making it ideal for any palate. Healthy Twist: Packed with vitamins and fiber, it’s a feel-good alternative to classic pasta dishes. For more delightful meals like this, don’t miss my Garlic Shrimp Spaghetti or explore other comforting vegetarian options that are sure to impress!

Spaghetti Squash Au Gratin Ingredients

For the Base
Spaghetti Squash – Provides a tender and slightly sweet foundation; substitute with zucchini for a lower-carb variation.
Unsalted Butter – Adds richness and depth to the cheese sauce; consider olive oil for a dairy-free alternative.

For the Cheese Sauce
Yellow Onion – Imparts sweetness and depth of flavor; shallots can be used for a milder result.
Garlic – Enhances the aroma and flavor profile; garlic powder works in a pinch.
All-Purpose Flour – Thickens the sauce; gluten-free flour is perfect for those with dietary restrictions.
Whole Milk – Creates a creamy consistency; almond or oat milk can be used for a dairy-free version.
Salt & Pepper – Essential for seasoning; adjust according to your taste.
Nutmeg – Adds warmth and a hint of spice; cinnamon or allspice can provide an interesting twist.

For the Cheesy Topping
Gruyere Cheese – Brings a nutty flavor to the dish; Swiss cheese can be substituted.
Sharp Cheddar Cheese – Adds a delightful tang; any aged cheese can serve as an alternative.
Parmesan Cheese – Contributes a salty flavor; Pecorino Romano is a good substitute.
Panko Breadcrumbs – Creates a crunchy topping; regular breadcrumbs can be crushed for a similar texture.
Fresh Parsley – An optional garnish for a pop of color; chives or basil work beautifully, too.

Step‑by‑Step Instructions for Spaghetti Squash Au Gratin

Step 1: Preheat the Oven
Begin by preheating your oven to 400°F (200°C). This prepares it for roasting the spaghetti squash, ensuring it cooks evenly and achieves that perfect tenderness. While it warms up, you’ll have time to prep the squash and gather your ingredients for a seamless cooking experience.

Step 2: Prepare the Spaghetti Squash
Carefully slice the spaghetti squash in half lengthwise, then scoop out the seeds using a spoon. Take a butter knife or your fingers to sprinkle some unsalted butter, along with a pinch of salt and pepper, into the hollow part of each half. This seasoning will enhance the natural sweetness as it roasts.

Step 3: Roast the Squash
Place the squash halves cut-side down on a baking sheet lined with parchment paper. Roast in the preheated oven for about 45-60 minutes, or until the skin is tender and a fork easily pierces the flesh. This step is crucial for achieving that spaghetti-like texture that makes the Spaghetti Squash Au Gratin so delightful.

Step 4: Shred the Squash
Once cooked, allow the squash to cool for a few minutes so you can handle it safely. Using a fork, gently scrape the flesh to create long strands resembling spaghetti. This step is both satisfying and essential, as the shredded squash will serve as the base of your creamy au gratin.

Step 5: Sauté the Aromatics
In a medium saucepan, melt 4 tablespoons of unsalted butter over medium heat. Add the chopped yellow onion and sauté for about 4-5 minutes, or until it becomes translucent. Stir in minced garlic and continue cooking for 1-2 minutes until fragrant. This mixture will lay the flavorful foundation for your cheese sauce.

Step 6: Create the Roux
Sprinkle all-purpose flour over the sautéed onion and garlic, stirring continuously for 1-2 minutes to form a roux. Be sure to cook it just enough to eliminate raw flour taste, ensuring your cheese sauce is smooth and rich without any gritty texture.

Step 7: Whisk in the Milk
Gradually pour in 2 cups of whole milk while whisking constantly to prevent lumps. Keep simmering the mixture over medium heat until it thickens, about 5-7 minutes. The goal is a creamy consistency that will beautifully envelop the shredded spaghetti squash.

Step 8: Stir in the Cheese
Once the sauce has thickened, season it with salt, pepper, and a dash of nutmeg to enhance the flavors. Remove the pot from heat and stir in the melted gruyere, sharp cheddar, and parmesan cheeses until fully combined and you achieve a luscious, cheesy sauce that will coat the squash perfectly.

Step 9: Combine and Transfer
In a large mixing bowl, combine the shredded spaghetti squash with the cheese sauce, mixing until each strand is well coated. Transfer this delectable mixture into a greased 9×13-inch baking dish, spreading it evenly for uniform cooking and crisping on top.

Step 10: Prepare the Topping
In a small bowl, mix together the remaining cheeses with panko breadcrumbs for that irresistible crunch. Sprinkle this topping evenly over the spaghetti squash mixture in the baking dish, ensuring every bite will have that delightful golden crust.

Step 11: Bake to Perfection
Place the baking dish in the oven and bake for 20-25 minutes, or until the topping is golden brown and bubbly. Keep an eye on it as it approaches the end of the baking time, as the visual cue of bubbling edges means your Spaghetti Squash Au Gratin is almost ready.

Step 12: Let it Rest and Serve
Once done baking, remove the dish from the oven and let it rest for about 5-10 minutes. This resting period allows the flavors to meld beautifully. Garnish with fresh parsley before serving, and prepare to indulge in a comforting and healthy twist on classic au gratin!

How to Store and Freeze Spaghetti Squash Au Gratin

Fridge: Store leftovers in an airtight container for up to 3-4 days. This keeps them fresh while preserving the creamy texture of the cheese sauce.

Freezer: For longer storage, freeze in a rigid, airtight container for up to 2 months. Ensure the dish is completely cooled before freezing to prevent ice crystals.

Reheating: Reheat in the oven at 350°F (175°C) for about 20-25 minutes until heated through, or microwave in 1-minute intervals until warm. Always cover with foil to keep the top from over-browning.

Make-Ahead Tip: This Spaghetti Squash Au Gratin can be assembled a day in advance and refrigerated. Just bake it fresh when you’re ready to serve!

Spaghetti Squash Au Gratin Variations

Feel free to get creative with this dish; the possibilities are endless, making it a fantastic way to cater to your taste buds.

  • Add Protein: Stir in cooked chicken, crispy bacon, or crumbled sausage for a heartier meal that the whole family will love. Protein-packed, it transforms your dish into a full-bodied feast!
  • Veggie Mix-Ins: Incorporate sautéed mushrooms, spinach, or even roasted bell peppers for a colorful and nutritious twist. The added veggies not only enhance the flavor but also boost the dish’s fiber content.
  • Spice it Up: Incorporate hot sauce or sprinkle in red pepper flakes into the cheese mixture for a delightful kick. The spice will elevate the dish, making it even more enjoyable for heat lovers!
  • Cheese Blends: Experiment with Fontina, Gouda, or a hint of creamy blue cheese for a more luxurious flavor profile. The rich variety will keep your taste buds intrigued and satisfied!
  • Dairy-Free Delight: Use nut milk and dairy-free cheese alternatives to make this a vegan-friendly option. Enjoy the comforting flavors without the dairy guilt!
  • Gluten-Free Flour: Swap the all-purpose flour for a gluten-free alternative to maintain that creamy texture while keeping it gluten-free. This option ensures everyone can enjoy this heavenly dish!
  • Fresh Herbs: Try adding fresh herbs like thyme or rosemary for a fragrant twist that lights up the flavor profile. These fresh herbs take the dish from good to utterly phenomenal!
  • Crispy Topping: For an extra crunch, mix in seeds such as pumpkin or sunflower with your panko breadcrumbs. This will give a delightful crunch that contrasts beautifully with the creamy cheese beneath.

For more comforting dishes, don’t miss my Garlic Shrimp Spaghetti next, or consider adding some roasted veggies to your plate for a wholesome meal.

Expert Tips for Spaghetti Squash Au Gratin

  • Watch the Squash: Keep an eye on the spaghetti squash while roasting; it should be tender but not mushy for the perfect texture.
  • Quality Cheese Matters: Use high-quality cheese for a rich flavor that elevates the entire dish—your taste buds will thank you!
  • Prepare Ahead: If you’re short on time, assemble the Spaghetti Squash Au Gratin in advance and refrigerate it; just pop it in the oven when you’re ready.
  • Customize Your Toppings: Feel free to switch up the cheese blend or add spices to the topping for additional flavor and texture that suits your family’s taste.
  • Don’t Skip the Nutmeg: A pinch of nutmeg is key in the cheese sauce—it adds a warm depth and can really make the flavors pop!

What to Serve with Spaghetti Squash Au Gratin

Pair your Spaghetti Squash Au Gratin with delightful sides that elevate the meal into a dining experience you won’t forget.

  • Garlic Bread: Warm, crusty garlic bread provides a satisfying crunch, perfect for scooping up that creamy au gratin. The buttery flavor complements the dish flawlessly.
  • Mixed Greens Salad: A fresh tossed salad with light vinaigrette adds a crispy contrast and a burst of color, balancing the richness of the gratin. Tossing in some nuts can provide an extra crunch, enhancing your meal’s textures.
  • Roasted Asparagus: Tender roasted asparagus drizzled with lemon juice adds brightness, while its earthy flavor pairs wonderfully with the cheesy notes of the gratin. This combination feels elegant yet accessible.
  • Herbed Quinoa: Light and fluffy quinoa seasoned with fresh herbs brings a nutty flavor and additional nutrients, pairing beautifully with the savory elements of the gratin. It’s a filling side that won’t weigh you down.
  • Grilled Chicken: A simple grilled chicken breast adds hearty protein to your plate, making it a satisfying main for meat lovers. Season with herbs to elevate the flavor profile.
  • Sparkling Lemonade: As a refreshing drink, sparkling lemonade cuts through the richness of the gratin, bringing a zesty contrast that will keep your palate excited.
  • Chocolate Mousse: For dessert, serve delicious chocolate mousse to wrap up your meal on a sweet note. Its velvety texture and rich flavor make it a delightful indulgence after a savory feast.
  • Roasted Vegetables: A medley of roasted seasonal vegetables complements the flavors of the gratin while offering a healthy, colorful addition to your meal.

Make Ahead Options

These Spaghetti Squash Au Gratin can be a lifesaver for busy weeknights! You can roast and shred the spaghetti squash up to 24 hours in advance; simply refrigerate the shredded squash in an airtight container to maintain its quality. Additionally, the cheese sauce can be prepared up to 3 days ahead—store it separately in the fridge. When you’re ready to enjoy this comforting dish, combine the shredded squash with the cheese sauce, transfer it to a baking dish, and top with cheese and breadcrumbs. Bake according to the original recipe, and you’ll have a delicious meal with minimal last-minute effort!

Spaghetti Squash Au Gratin Recipe FAQs

What is the best way to choose a ripe spaghetti squash?
Absolutely! When selecting a spaghetti squash, look for one that feels heavy for its size and has a smooth, firm skin. Avoid any with dark spots or soft spots, as these may indicate overripeness or spoilage. A vibrant golden-yellow hue is your best indicator of freshness.

How should I store leftover Spaghetti Squash Au Gratin?
Totally! Store your leftovers in an airtight container in the refrigerator for up to 3-4 days. Make sure it’s completely cooled before sealing to keep the moisture at bay and preserve that creamy texture of the cheese sauce. I often love to enjoy it again later in the week!

Can I freeze Spaghetti Squash Au Gratin?
Definitely! For freezing, allow your dish to cool fully before transferring it into a rigid, airtight container. It will keep well for up to 2 months in the freezer. Just be sure to label it with the date. When you’re ready to enjoy it again, let it thaw in the fridge overnight before reheating.

What if the cheese sauce turns out lumpy?
No worries! If your cheese sauce becomes lumpy, it might mean it was heated too quickly or not whisked enough during the milk incorporation. To fix it, try blending the sauce in a blender until smooth. Remember, patience is key during the cooking process—whisk slowly and allow it to thicken gradually for the creamiest results.

Are there any dietary considerations for Spaghetti Squash Au Gratin?
Yes, certainly! This dish is naturally vegetarian and gluten-free, but if you’re preparing it for someone with allergens, watch out for ingredients like dairy in the cheese and butter. You can make this dish dairy-free by using nut-based milk and dairy-free cheese substitutes. Always check ingredient labels to keep everyone safe.

Can I prepare Spaghetti Squash Au Gratin in advance?
Definitely! You can assemble the entire dish a day ahead of time. Simply prepare it, cover it tightly, and refrigerate. When you’re ready to serve it, pop it straight into the oven; you might need to adjust the cooking time—just keep an eye on that golden topping!

Spaghetti Squash Au Gratin

Creamy Spaghetti Squash Au Gratin for Guilt-Free Comfort

Delight in this creamy Spaghetti Squash Au Gratin, a healthy and gluten-free twist on a classic comfort food.
Prep Time 15 minutes
Cook Time 1 hour
Resting Time 10 minutes
Total Time 1 hour 25 minutes
Servings: 6 servings
Course: Dinner
Cuisine: American
Calories: 320

Ingredients
  

For the Base
  • 1 medium Spaghetti Squash Substitute with zucchini for lower-carb variation.
  • 4 tablespoons Unsalted Butter Consider olive oil for dairy-free alternative.
For the Cheese Sauce
  • 1 medium Yellow Onion Shallots can be used for a milder result.
  • 2 cloves Garlic Garlic powder works in a pinch.
  • 1/4 cup All-Purpose Flour Gluten-free flour is perfect for dietary restrictions.
  • 2 cups Whole Milk Almond or oat milk can be used for dairy-free version.
  • 1 teaspoon Salt Adjust according to your taste.
  • 1 teaspoon Pepper Adjust according to your taste.
  • 1/4 teaspoon Nutmeg Cinnamon or allspice can provide an interesting twist.
For the Cheesy Topping
  • 1 cup Gruyere Cheese Swiss cheese can be substituted.
  • 1 cup Sharp Cheddar Cheese Any aged cheese can serve as an alternative.
  • 1/2 cup Parmesan Cheese Pecorino Romano is a good substitute.
  • 1 cup Panko Breadcrumbs Regular breadcrumbs can be crushed for similar texture.
  • 2 tablespoons Fresh Parsley Chives or basil work beautifully too.

Equipment

  • Oven
  • Baking Sheet
  • Medium saucepan
  • Mixing Bowl

Method
 

Preparation Steps
  1. Preheat your oven to 400°F (200°C).
  2. Carefully slice the spaghetti squash in half lengthwise and scoop out the seeds.
  3. Sprinkle the insides of each half with butter, salt, and pepper.
  4. Place the squash halves cut-side down on a baking sheet and roast for 45-60 minutes.
  5. Allow the squash to cool, then shred the flesh into spaghetti-like strands.
  6. Melt butter in a saucepan, add onion and sauté until translucent.
  7. Add minced garlic and cook until fragrant.
  8. Sprinkle flour over the mixture and cook for 1-2 minutes to form a roux.
  9. Gradually whisk in milk and simmer until thickened.
  10. Stir in nutmeg, salt, pepper, and the cheeses until melted.
  11. Combine shredded squash with cheese sauce and transfer to a greased baking dish.
  12. Mix remaining cheeses with panko breadcrumbs and sprinkle over the top.
  13. Bake for 20-25 minutes until golden brown and bubbly.
  14. Let it rest for 5-10 minutes before serving and garnish with parsley.

Nutrition

Serving: 1servingCalories: 320kcalCarbohydrates: 30gProtein: 15gFat: 18gSaturated Fat: 10gPolyunsaturated Fat: 2gMonounsaturated Fat: 4gCholesterol: 50mgSodium: 800mgPotassium: 600mgFiber: 4gSugar: 3gVitamin A: 500IUVitamin C: 17mgCalcium: 450mgIron: 1.5mg

Notes

This dish is a great option for meal prep or can be assembled in advance and baked when ready.

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